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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTATGTCACTGGAGAAGGCCTCGAGCAACCGTATCCACGAATGGCATTTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctctatcagaatttgaccttgtgaactttggatctgaaatacattgtcagctttacgatttccgagtttcagtcaaccttcaagttcagcatgta...

Basic information

species Physcomitrella patens
transcript PP1S99_229V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362752|gb|DC950552.1|DC950552
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|162166627|gb|FC343519.1|FC343519
EST:     GTTGCGGTCGCACAGACTTTCAG                         GGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: GTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|162229837|gb|FC404290.1|FC404290
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         GGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|208367799|gb|DC944045.1|DC944045
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|162167043|gb|FC342505.1|FC342505
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         GGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|37828787|gb|BJ586799.1|BJ586799
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|100411668|gb|BY992279.1|BY992279
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|208396585|gb|DC915897.1|DC915897
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|208369415|gb|DC948181.1|DC948181
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|37841726|gb|BJ599734.1|BJ599734
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
EST: gi|208367777|gb|DC944023.1|DC944023
EST:     TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAG                         AGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG
genomic: TTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctcta ... actgtgttagAGAGGAGACGCAAGCCGGCTATATAAGTCGGTGCACTCGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACGTATGTCACTGGAGAAGGCCTCGAGCAACCGTATCCACGAATGGCATTTACTGGAGATGCTCTCCTTATTCGTGGTTGCGGTCGCACAGACTTTCAGgttgcctctatcagaatttgaccttgtgaactttggatctgaaatacattgtcagctttacgatttccgagtttcagtcaaccttcaagttcagcatgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG