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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttggacaatattgttatggtgcctggctctcattttggtcccaggataggatgtagcgcaccaatagtctaatctggcttttctgatgtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGACTCTTTAATGCCGTGTTCTTGAAAGCACACTGTTCATCCTCATCCGGAG

Basic information

species Physcomitrella patens
transcript PP1S99_229V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359919|gb|DC934892.1|DC934892
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|208384928|gb|DC903435.1|DC903435
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100389518|gb|BY988996.1|BY988996
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100428897|gb|BY959488.1|BY959488
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100400342|gb|BY954429.1|BY954429
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|18349820|gb|BJ181871.1|BJ181871
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100430949|gb|BY959951.1|BY959951
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100422429|gb|BY976369.1|BY976369
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|18360987|gb|BJ193051.1|BJ193051
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100411668|gb|BY992279.1|BY992279
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|162166628|gb|FC343520.1|FC343520
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTAGTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|18364447|gb|BJ196520.1|BJ196520
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|162229838|gb|FC404291.1|FC404291
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTAGTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|208358441|gb|DC930573.1|DC930573
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|208392227|gb|DC929488.1|DC929488
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|162167044|gb|FC342506.1|FC342506
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTAGTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|208352443|gb|DC902046.1|DC902046
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100355071|gb|BY964986.1|BY964986
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100372654|gb|BY948639.1|BY948639
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|100391246|gb|BY971560.1|BY971560
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
EST: gi|208390552|gb|DC937484.1|DC937484
EST:     CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATT                         TGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA
genomic: CAATTGGAGCGGTTTTGGCGAAGTTTGTGGGAGGTTTTTCTTGTGTAATTgtaagttggc ... gtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggataggatgtagcgcaccaatagtctaatctggcttttctgatgtgcgatcagTGGCGACCGACCAAGGCAAGGTTTTACATGCAAGTGTGTGGAGTGTCACGACTCTTTAATGCCGTGTTCTTGAAAGCACACTGTTCATCCTCATCCGGAG
                                      ttctgat  putative branch site (score: 3)