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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttgattactcctcaaattgtttcattcacgaacatgacattccacgcttttcttttgtttagttctttatctttttgtgccaactttcaatattcaatttttttaagcatcaagtagtgtccaaacatgtgaggctctactaatatttgacatttagaacttgcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAGCAGTTGGGGCTGAAATTGTTGTATGTCATGAACACCCATGTACACGCAG

Basic information

species Physcomitrella patens
transcript PP1S99_229V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359919|gb|DC934892.1|DC934892
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208384928|gb|DC903435.1|DC903435
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208362752|gb|DC950552.1|DC950552
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100389518|gb|BY988996.1|BY988996
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100428897|gb|BY959488.1|BY959488
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100400342|gb|BY954429.1|BY954429
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|18349820|gb|BJ181871.1|BJ181871
EST:     CTTACACTTACTTGCTGGCANATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGG
EST: gi|100430949|gb|BY959951.1|BY959951
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100422429|gb|BY976369.1|BY976369
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|18360987|gb|BJ193051.1|BJ193051
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100411668|gb|BY992279.1|BY992279
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|162166628|gb|FC343520.1|FC343520
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|18364447|gb|BJ196520.1|BJ196520
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|162229838|gb|FC404291.1|FC404291
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208358441|gb|DC930573.1|DC930573
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208392227|gb|DC929488.1|DC929488
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCC---                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|162167044|gb|FC342506.1|FC342506
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208352443|gb|DC902046.1|DC902046
EST:     CTTACACTTACTTGCTGGCANATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAANACCGCANANAGGGATGTCNCTCTTGTGNAN
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100355071|gb|BY964986.1|BY964986
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100372654|gb|BY948639.1|BY948639
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|100391246|gb|BY971560.1|BY971560
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
EST: gi|208390552|gb|DC937484.1|DC937484
EST:     CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTG                         CTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG
genomic: CTTACACTTACTTGCTGGCAGATACTGCGCATTCGGATCGACCTGCCGTGgcaagtttga ... gcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtccaaacatgtgaggctctactaatatttgacatttagaacttgcgggtgcagCTTGTGGATCCTGTGGACAAGACCGCAGAGAGGGATGTCGCTCTTGTGGAGCAGTTGGGGCTGAAATTGTTGTATGTCATGAACACCCATGTACACGCAG
                       taatatttgacattta  TA-rich tract