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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGCAAGTTGAATGATGGCTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTGgtgcagttccctctcttgtagccaaaagctgcctgtctccaaccttctctactcatccatcagttgctatttctttaggagccataaaaaatggctttga...

Basic information

species Physcomitrella patens
transcript PP1S99_189V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100387720|gb|BY951720.1|BY951720
EST:     CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTG                         GAGTAGTAACCGGT
genomic: CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTGgtgcagttcc ... tctttttcagGAGTAGTAACCGGT
EST: gi|208347039|gb|DC909337.1|DC909337
EST:     CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTG                         GAGTAGTAACCGGTGGTGG
genomic: CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTGgtgcagttcc ... tctttttcagGAGTAGTAACCGGTGGTGG
EST: gi|162239549|gb|FC414062.1|FC414062
EST:     ATACGATGGGATGACACCTACTG                         GAGTAGTAACCGGTGGTGGCCAAAACAACTGGCGTGGATCTTGGACTCACA
genomic: ATACGATGGGATGACACCTACTGgtgcagttcc ... tctttttcagGAGTAGTAACCGGTGGTGGCCAAAACAACTGGCGTGGATCTTGGACTCACA
EST: gi|208382559|gb|DC923201.1|DC923201
EST:     CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTG                         GAGTAGTAACCGGTGGTGGCCAAAACAACTGGCGTGGATCTTGGACTCACA
genomic: CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTGgtgcagttcc ... tctttttcagGAGTAGTAACCGGTGGTGGCCAAAACAACTGGCGTGGATCTTGGACTCACA
EST: gi|100362233|gb|BY947256.1|BY947256
EST:     CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTG                         GAGTAGTAACCGGTGGTGGGCAAA-CAACTGGCGTGGATCTGGGACTCACA
genomic: CTATGCTTGGAATCCTCATTGTCGATCATACGATGGGATGACACCTACTGgtgcagttcc ... tctttttcagGAGTAGTAACCGGTGGTGGCCAAAACAACTGGCGTGGATCTTGGACTCACA