1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGGCCCATGATGGTCGTGATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactctctacccttgaattctgcaggtggatctattacgttgtactttagtgaccttcggaaaggaagaccgtttaatcgtacttatatttatga...
species | Physcomitrella patens |
transcript | PP1S99_189V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAA TGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGCEST: gi|100404339|gb|BY973527.1|BY973527
genomic: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactc ... ctgattacagTGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
EST: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAA TGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGCEST: gi|100387720|gb|BY951720.1|BY951720
genomic: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactc ... ctgattacagTGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
EST: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAA TGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGCEST: gi|208347039|gb|DC909337.1|DC909337
genomic: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactc ... ctgattacagTGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
EST: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAA TGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGCEST: gi|100362233|gb|BY947256.1|BY947256
genomic: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactc ... ctgattacagTGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
EST: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAA TGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
genomic: GATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactc ... ctgattacagTGAGAAGAATATGGCAGCAATATCTCTGATGTTCCCAGTTGGAGACGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCCCATGATGGTCGTGATATCTTTTTCCTGCTCCAAATCCCTGGAGCTTACAAATTCGATGTCAAgtaagcactctctacccttgaattctgcaggtggatctattacgttgtactttagtgaccttcggaaaggaagaccgtttaatcgtacttatatttatga
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT