Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccagctatcatgctctgcctggaattttccttctctgtagccactggtttcaagctggcatttgtatttttatcttataccgaattgaattttgtatttgtagtcattttatttttgaatccttgctcatttcaagacattttgacgtttgaaagGTGGAGGAAGAGACTGGAATACACATAAAGGCATCAGACCTGATTGACTTGACTGGTCTATTAGATGAGTCAACAGGTCGAAAAATGTTTCCGTCACCG

Basic information

species Physcomitrella patens
transcript PP1S99_13V6.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162209167|gb|FC385386.1|FC385386
EST:     GTATGCTGGATGACGATGCTGGTGACTTTGTTGGAACTGCTGCTCGTGAG                         GTGGAGGAAGAGACTGGAATACACATAAAGGCATCAGACCTGATTGACTTG
genomic: GTATGCTGGATGACGATGCTGGTGACTTTGTTGGAACTGCTGCTCGTGAGgtacccagct ... cgtttgaaagGTGGAGGAAGAGACTGGAATACACATAAAGGCATCAGACCTGATTGACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcattttatttttgaatccttgctcatttcaagacattttgacgtttgaaagGTGGAGGAAGAGACTGGAATACACATAAAGGCATCAGACCTGATTGACTTGACTGGTCTATTAGATGAGTCAACAGGTCGAAAAATGTTTCCGTCACCG
                                       ttttgac  putative branch site (score: 3)
     attttatttttgaat  TA-rich tract