1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCCTGACCTGGTAGCTCCTGAGAGCTCCAGCTCGGTCTCATGTGGACTCTTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcatctagcggagtgcccactgtctcgttggtctatttatagtggtaaccactatttaagagattttaccctcttgcctgaatcgcgaattggt...
species | Physcomitrella patens |
transcript | PP1S99_13V6.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|100369453|gb|BY948102.1|BY948102
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|100443354|gb|BY963650.1|BY963650
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|100388471|gb|BY952073.1|BY952073
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|208364075|gb|DC939612.1|DC939612
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|162209167|gb|FC385386.1|FC385386
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|208383819|gb|DC911501.1|DC911501
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGCGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCCEST: gi|100389153|gb|BY952357.1|BY952357
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
EST: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAG GTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
genomic: TTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcat ... cacggagcagGTGTGTACTGTGGCGATAATTTCTAACAAGGGCTTCGTGACTGCGGCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGACCTGGTAGCTCCTGAGAGCTCCAGCTCGGTCTCATGTGGACTCTTGCGACACATCGCTTCATGTCTGCAAGCTGCCTAGCACGTGTTGCGAAGgtgagcgcatctagcggagtgcccactgtctcgttggtctatttatagtggtaaccactatttaagagattttaccctcttgcctgaatcgcgaattggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC