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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCTGGCATCGTATTTGCGCGAGGCGGCGCTGTAGGGATCCTCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaaggcttttcactacattgagtatcctcattcgctaaagcgcatttaccgtcaaacatgatgttgattacgttttgaaacccagggggctagagcttgtgaattttgaaatttctgtgcag

Basic information

species Physcomitrella patens
transcript PP1S99_13V6.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100369453|gb|BY948102.1|BY948102
EST:     TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAG                         GCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
genomic: TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaagg ... ttctgtgcagGCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
EST: gi|100388471|gb|BY952073.1|BY952073
EST:     TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGGTCTCACTGAACAG                         GCTCGTGTGCCTGTGGGGAGAACTATTATGGAGGTACCTGCTGGTATGCTG
genomic: TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaagg ... ttctgtgcagGCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
EST: gi|208364075|gb|DC939612.1|DC939612
EST:     TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAG                         GCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
genomic: TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaagg ... ttctgtgcagGCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
EST: gi|162209167|gb|FC385386.1|FC385386
EST:     TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAG                         GCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG
genomic: TCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaagg ... ttctgtgcagGCTCGTGTGCCTGTGGGGAGAACTATTATGGAGTTACCTGCTGGTATGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTACCTGGCATCGTATTTGCGCGAGGCGGCGCTGTAGGGATCCTCATGTTGTTGGAATGCGAAGGAGTTAAGTACGCGGTTCTCACTGAACAGgtgtgtaaggcttttcactacattgagtatcctcattcgctaaagcgcatttaccgtcaaacatgatgttgattacgttttgaaacccagggggctagagcttgtgaattttgaaatttctgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG