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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCGACAATGGCTGGACTACATGAAAGGAAGTTCTGGTATTTTGACTCTGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttgcaaataagaatcaccaattgttgccagacttatgattaggattttgagcatgtgatcgatacaaatagggcattgtagtcttaattagcc...

Basic information

species Physcomitrella patens
transcript PP1S99_13V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100436977|gb|BY979621.1|BY979621
EST:     TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
genomic: TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
EST: gi|100369453|gb|BY948102.1|BY948102
EST:     TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
genomic: TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
EST: gi|100388471|gb|BY952073.1|BY952073
EST:     TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
genomic: TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
EST: gi|208364075|gb|DC939612.1|DC939612
EST:     TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
genomic: TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
EST: gi|162209167|gb|FC385386.1|FC385386
EST:     TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
genomic: TGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAGTTCAAGGCAGAC
EST: gi|100389153|gb|BY952357.1|BY952357
EST:     GGGCGGTAGTGGGGGAGGTCGTTGTTNCTT-GAGGAAGATCCTTATCCAG                         AGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAAAGTTC
genomic: GGGCGGTAGTGGGGGAGGTCGTTGTT-CTTTGAGGAAGATCCTTATCCAGgtagtagttg ... tttttaccagAGTATAGACATGTTCGGGCCGCGTGTTGGATTTGTAAA-GTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCGACAATGGCTGGACTACATGAAAGGAAGTTCTGGTATTTTGACTCTGGGCGGTAGTGGGGGAGGTCGTTGTTCTTTGAGGAAGATCCTTATCCAGgtagtagttgcaaataagaatcaccaattgttgccagacttatgattaggattttgagcatgtgatcgatacaaatagggcattgtagtcttaattagcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA