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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgaatccagatttttggtgatgttggtcttatcactgccaaagttttcaagattgcacaggagagttaatggaccttcaaatctgtcatgcagATGTTGGTTACTTGTATGACTATTTTAGCAATTGATTTTACTGTATTTCCGAGAAGGTACGGCAAAACAGAGACCTACGGAACAGGATTG

Basic information

species Physcomitrella patens
transcript PP1S99_108V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179977|gb|FC356048.1|FC356048
EST:     ATCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATG                         ATGTTGGTTACTTGTATGACTATTTTAGCAATTGATTTTACTGTATTTCCG
genomic: ATCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATGgtacgttgaa ... tgtcatgcagATGTTGGTTACTTGTATGACTATTTTAGCAATTGATTTTACTGTATTTCCG
EST: gi|100448460|gb|CJ972759.1|CJ972759
EST:     -TCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATG                         ATGT-GGNTTACTTGTATGACTATTT
genomic: ATCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATGgtacgttgaa ... tgtcatgcagATGTTGG-TTACTTGTATGACTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagttttcaagattgcacaggagagttaatggaccttcaaatctgtcatgcagATGTTGGTTACTTGTATGACTATTTTAGCAATTGATTTTACTGTATTTCCGAGAAGGTACGGCAAAACAGAGACCTACGGAACAGGATTG
                         agttaat  putative branch site (score: 4)
     ttttcaa  TA-rich tract