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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgtcattcatgccccagctatgtcttcaaaagtttagttttatatttaagcttacacgagctgactctgatgcatttaagtgtaaatgaacgttttgaagGTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAAATCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATG

Basic information

species Physcomitrella patens
transcript PP1S99_108V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179977|gb|FC356048.1|FC356048
EST:     ATTTTTCCTGTCACATTTGGATTACTTTTCCTTGTACTCGGTTCTAAAAG                         GTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAAATCGAAATGC
genomic: ATTTTGCCTGTCACATTTGGATTACTTTTCCTTGTACTCGGTTCTAAAAGgtgggtgtca ... cgttttgaagGTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAAATCGAAATGC
EST: gi|100448460|gb|CJ972759.1|CJ972759
EST:     ATTTTGCCTGTCACATTTGGATTACTTTTCCTTGTACTCGGTTCTAAAAG                         GTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAA-TCGAAATGC
genomic: ATTTTGCCTGTCACATTTGGATTACTTTTCCTTGTACTCGGTTCTAAAAGgtgggtgtca ... cgttttgaagGTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAAATCGAAATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagcttacacgagctgactctgatgcatttaagtgtaaatgaacgttttgaagGTCGCAGTCATCATCTATCATTGGAACCCCAGTGGAGAAAAATCGAAATGCAACACGAAAGATTTATCTCTCATCCTATCGATTTGTAATG
                            atttaagtgtaaat  TA-rich tract