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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtagatttagaacaaattgttccgttcctacaactcaactttcaacggtggttttatttcagaatgttgattagggtttttcttggtgttgattgcagTGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG

Basic information

species Physcomitrella patens
transcript PP1S99_108V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18341462|gb|BJ173497.1|BJ173497
EST:     TTTTAACTGTCTGGGCAGATTACTTTGTGGAGAGAATCTCTAGAAGAACG                         TGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG
genomic: TTTTAACTGTCTGGGCAGATTACTTTGTGGAGAGAATCTCTAGAAGAACGgtgattattc ... ttgattgcagTGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG
EST: gi|18335300|gb|BJ167318.1|BJ167318
EST:     TTTTAACTGTCTGGGCAGATTACTTTGTGGAGAGAATCTCTAGAAGAACG                         TGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG
genomic: TTTTAACTGTCTGGGCAGATTACTTTGTGGAGAGAATCTCTAGAAGAACGgtgattattc ... ttgattgcagTGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacggtggttttatttcagaatgttgattagggtttttcttggtgttgattgcagTGCAACTTGTCATATGTTTTGTTCGTGTTGGCTCAGAATTTTGAG
                                           tgttgat  putative branch site (score: 4)
        ttttatttcagaat  TA-rich tract