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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgactaactgtccttagcattttaattggaatgatgtattgtaagaactggatcaagaccggtcatttttgtgagaaatgttttttttttttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG

Basic information

species Physcomitrella patens
transcript PP1S99_108V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18331508|gb|BJ163519.1|BJ163519
EST:     TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCG                         GCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
genomic: TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCGgtaggtcttt ... ttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
EST: gi|100448460|gb|CJ972759.1|CJ972759
EST:     TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCG                         GCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
genomic: TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCGgtaggtcttt ... ttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
EST: gi|100363291|gb|BY984452.1|BY984452
EST:     TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCG                         GCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
genomic: TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCGgtaggtcttt ... ttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
EST: gi|18331760|gb|BJ163771.1|BJ163771
EST:     TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCG                         GCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
genomic: TGGAGGGTACCACGATGCGGGAGATCGCCGCCATGTCTGCATTGTTTCCGgtaggtcttt ... ttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactggatcaagaccggtcatttttgtgagaaatgttttttttttttctgttcagGCATTTTTGCTTCTGCGGCAGTGTTGGCCAGAATCCTCAG
                                 tgttttttttttttct  CT-rich tract
                   atttttgtgagaaatg  TA-rich tract