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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTTACGAAACTTTGGCTCTTGGCAACTCTACTGCGGATATGGAGCGATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatcattggattctcccgtttcatttttttttattttgtaggctgacatttttgtcactgttcataagttccatcgttgtcgagatgacccttaaattgactctggctggtaacgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S98_36V6.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373612|gb|DC952437.1|DC952437
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208398476|gb|DC924746.1|DC924746
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208366308|gb|DC943840.1|DC943840
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208386562|gb|DC956882.1|DC956882
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208347378|gb|DC925346.1|DC925346
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208370716|gb|DC948253.1|DC948253
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|67698630|gb|BJ958863.1|BJ958863
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208366007|gb|DC951180.1|DC951180
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208360960|gb|DC957481.1|DC957481
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208365541|gb|DC954782.1|DC954782
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208368267|gb|DC951519.1|DC951519
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208346548|gb|DC916814.1|DC916814
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208392853|gb|DC928539.1|DC928539
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|162271188|gb|FC446137.1|FC446137
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAG
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAG
EST: gi|208363377|gb|DC946975.1|DC946975
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208393705|gb|DC946055.1|DC946055
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208367982|gb|DC951007.1|DC951007
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|67579314|gb|BJ951445.1|BJ951445
EST:     CGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: CGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208353455|gb|DC946319.1|DC946319
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208377562|gb|DC922665.1|DC922665
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGGTGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208371846|gb|DC951838.1|DC951838
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: gi|208345900|gb|DC921085.1|DC921085
EST:     GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG                         AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT