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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgacgattccttctgtgttggctacgaatgttggctatgaaaaaaccacagttacacttgcgaagagattcgctgtttcctgcctatcacaatactcaaagccttgtaaacggtaattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCTCTTGGCAACTCTACTGCGGATATGGAGCGATTTGTTACTGAGTTCTCGC

Basic information

species Physcomitrella patens
transcript PP1S98_36V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373612|gb|DC952437.1|DC952437
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCGAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208398476|gb|DC924746.1|DC924746
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208366308|gb|DC943840.1|DC943840
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208386562|gb|DC956882.1|DC956882
EST:     CATCTGCACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208347378|gb|DC925346.1|DC925346
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208370716|gb|DC948253.1|DC948253
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|67698630|gb|BJ958863.1|BJ958863
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208366007|gb|DC951180.1|DC951180
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208360960|gb|DC957481.1|DC957481
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208365541|gb|DC954782.1|DC954782
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208368267|gb|DC951519.1|DC951519
EST:     ATNTACACTTAANGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGGTATGAAACGGGGNCACCGAGCGATCCAAATTTTACGAAACTTTGGC
genomic: ATCTACACTTAA-GAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTAC-CCGAGCGATCCAAATTTTACGAAACTTTGGC
EST: gi|208346548|gb|DC916814.1|DC916814
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208392853|gb|DC928539.1|DC928539
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|162271188|gb|FC446137.1|FC446137
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208363377|gb|DC946975.1|DC946975
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCAAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208393705|gb|DC946055.1|DC946055
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208367982|gb|DC951007.1|DC951007
EST:     CATCTACACTTAAGAAATTTCANGGANGGATCGCAAGTNCCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208363326|gb|DC935493.1|DC935493
EST:     CATCTGCACTTAANAAATATCATGGATGGAT-GCAANTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCNANCGATCCAA-TTTTACNAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208353455|gb|DC946319.1|DC946319
EST:     CATCTACACTTAAGAAATACCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208377562|gb|DC922665.1|DC922665
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208371846|gb|DC951838.1|DC951838
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
EST: gi|208345900|gb|DC921085.1|DC921085
EST:     CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACG                         GTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT
genomic: CATCTACACTTAAGAAATATCATGGATGGATTGCAAGTACCGCATTCACGgtatgtgacg ... aattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctgtttcctgcctatcacaatactcaaagccttgtaaacggtaattctgtagGTTGCTATGAAACTGGTACCCGAGCGATCCAAATTTTACGAAACTTTGGCTCTTGGCAACTCTACTGCGGATATGGAGCGATTTGTTACTGAGTTCTCGC
                                  ttgtaaa  TA-rich tract