1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatatcattggattctcccgtttcatttttttttattttgtaggctgacatttttgtcactgttcataagttccatcgttgtcgagatgacccttaaattgactctggctggtaacgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTACAGGTTCAGTTCTCGTAAGATGAGAAGAGCTTTTTCAGGTTACTGGTC
species | Physcomitrella patens |
transcript | PP1S98_36V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208398476|gb|DC924746.1|DC924746
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208366308|gb|DC943840.1|DC943840
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208386562|gb|DC956882.1|DC956882
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208347378|gb|DC925346.1|DC925346
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208370716|gb|DC948253.1|DC948253
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|67698630|gb|BJ958863.1|BJ958863
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208366007|gb|DC951180.1|DC951180
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208360960|gb|DC957481.1|DC957481
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208365541|gb|DC954782.1|DC954782
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208368267|gb|DC951519.1|DC951519
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208346548|gb|DC916814.1|DC916814
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208392853|gb|DC928539.1|DC928539
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|162271188|gb|FC446137.1|FC446137
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGEST: gi|208363377|gb|DC946975.1|DC946975
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAG
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208393705|gb|DC946055.1|DC946055
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208367982|gb|DC951007.1|DC951007
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|67579314|gb|BJ951445.1|BJ951445
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: CGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208353455|gb|DC946319.1|DC946319
genomic: CGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208377562|gb|DC922665.1|DC922665
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGGTGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208371846|gb|DC951838.1|DC951838
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTEST: gi|208345900|gb|DC921085.1|DC921085
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
EST: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTG AAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
genomic: GATTTGTTACTGAGTTCTCGCCAATATTGGCGGAAAATCACGAGTTTTTGgtaaatatca ... acgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACT
gttccatcgttgtcgagatgacccttaaattgactctggctggtaacgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTACAGGTTCAGTTCTCGTAAGATGAGAAGAGCTTTTTCAGGTTACTGGTC
tggtaac putative branch site (score: 2)
ttaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcattggattctcccgtttcatttttttttattttgtaggctgacatttttgtcactgttcataagttccatcgttgtcgagatgacccttaaattgactctggctggtaacgtgtgcagAAATCCGTGAACTTGGATGACCTCAAGGCATCATAAGATGAGCGCTAAACTACAGGTTCAGTTCTCGTAAGATGAGAAGAGCTTTTTCAGGTTACTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT