1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCCCTTCTTACTTTGGAGTTCCAGTTAGAATGCATGGATTACCGCCGTGAAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAGgtaaaatatgtctcatggtttcgtatatatcccattcgtttgtcaatctcgtcctgccactagggagtccttgcttacgacaagaatagggctggtatgttatggaatgcag
species | Physcomitrella patens |
transcript | PP1S98_210V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAG CGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGTEST: gi|162194509|gb|FC370732.1|FC370732
genomic: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAGgtaaaatatg ... tggaatgcagCGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGT
EST: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAG CGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGTEST: gi|162204830|gb|FC381174.1|FC381174
genomic: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAGgtaaaatatg ... tggaatgcagCGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGT
EST: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAG CGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGT
genomic: AAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAGgtaaaatatg ... tggaatgcagCGGGAGCGTGGGGAGTCGTTTCTTTCTTTTGCGAAGGATTTGACTGCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCCTTCTTACTTTGGAGTTCCAGTTAGAATGCATGGATTACCGCCGTGAAAATTGGTACCATGCTGATCTCGACTACGACACTTTCGAAATTTTGCAGgtaaaatatgtctcatggtttcgtatatatcccattcgtttgtcaatctcgtcctgccactagggagtccttgcttacgacaagaatagggctggtatgttatggaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT