1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgatgtattggctgaacttccatatgcgtctcttttccgttcgaatgagaattatgtacttgtttttgcatttgtttcaatttacaacagggaccccctgccttgaatcagcagagaatgaaacccttcgctggtgttttgtatgttgctttgacgcgcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
species | Physcomitrella patens |
transcript | PP1S98_210V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAG GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAEST: gi|162216949|gb|FC392248.1|FC392248
genomic: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAGgtgatgtatt ... gcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
EST: CACTGTTCCGGCCGCAGCAG GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAEST: gi|162194509|gb|FC370732.1|FC370732
genomic: CACTGTTCCGGCCGCAGCAGgtgatgtatt ... gcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
EST: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAG GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAEST: gi|162155618|gb|FC331036.1|FC331036
genomic: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAGgtgatgtatt ... gcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
EST: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAN GTGGACTTGGTGGCAGCAGTTCATATTGCTG
genomic: TAATCACTTATAGGAATCGGTTTCCGTGGTCACTGTTCCGGCCGCAGCAGgtgatgtatt ... gcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTG
agagaatgaaacccttcgctggtgttttgtatgttgctttgacgcgcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
ctttgac putative branch site (score: 7)
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgtattggctgaacttccatatgcgtctcttttccgttcgaatgagaattatgtacttgtttttgcatttgtttcaatttacaacagggaccccctgccttgaatcagcagagaatgaaacccttcgctggtgttttgtatgttgctttgacgcgcactcacagGTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT