1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcctctgcgaattggatcttctgcacaggatttgaaatcggtcatgtctctttccgatttttcttttctaatgtagaaacatgtggattcttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATATGAAATGGTAGCAGATAAGGATAAGGAACAAACCAATAGACTTGGGAAG
species | Physcomitrella patens |
transcript | PP1S98_210V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA GTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATAEST: gi|162202476|gb|FC379211.1|FC379211
genomic: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAgtaagttcac ... cttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATA
EST: ATTGCTGATAGGGA GTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATAEST: gi|162216949|gb|FC392248.1|FC392248
genomic: ATTGCTGATAGGGAgtaagttcac ... cttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATA
EST: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA GTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATAEST: gi|162194509|gb|FC370732.1|FC370732
genomic: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAgtaagttcac ... cttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATA
EST: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGA GTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATA
genomic: GTGGACTTGGTGGCAGCAGTTCATATTGCTGATAGGGAgtaagttcac ... cttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATA
tgtctctttccgatttttcttttctaatgtagaaacatgtggattcttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATATGAAATGGTAGCAGATAAGGATAAGGAACAAACCAATAGACTTGGGAAG
ttctaat putative branch site (score: 9)
ttctt putative PPT
atttttcttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctctgcgaattggatcttctgcacaggatttgaaatcggtcatgtctctttccgatttttcttttctaatgtagaaacatgtggattcttgaaacagGTACTTCTCGTCTTTACAGAAAGAATTGAGTAAGTATGATCGTGTATTATATGAAATGGTAGCAGATAAGGATAAGGAACAAACCAATAGACTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - -ttctgca