1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatagttgatttgaaattgtggctgttattctttgcggtttaccttccgagatgatgttactaatacttggtgggttgaaaatcaccgcatggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACAGTTGTACTTGTGGGATGTACATCAGTCGACTTTAGAGAAGAACTCTGT
species | Physcomitrella patens |
transcript | PP1S98_210V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGCGCGCATGCCGGATGGAAGATGTGTAG GGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACEST: gi|18329594|gb|BJ161600.1|BJ161600
genomic: GGCTTGCGCGCATGCCGGATGGAAGATGTGTAGgtaatgttgt ... atggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
EST: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAG GGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACEST: gi|18363585|gb|BJ195657.1|BJ195657
genomic: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAGgtaatgttgt ... atggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
EST: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAG GGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACEST: gi|100397331|gb|BY972445.1|BY972445
genomic: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAGgtaatgttgt ... atggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
EST: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAG GGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACEST: gi|162155618|gb|FC331036.1|FC331036
genomic: AGAGGCGAGGCGAGAAGGGCTTGCGCGCATGCCGGATGGAAGATGTGTAGgtaatgttgt ... atggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
EST: GGCTTGCGCGCATGCCGGATGGAAGATGTGTAG GGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
genomic: GGCTTGCGCGCATGCCGGATGGAAGATGTGTAGgtaatgttgt ... atggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGAC
ttccgagatgatgttactaatacttggtgggttgaaaatcaccgcatggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACAGTTGTACTTGTGGGATGTACATCAGTCGACTTTAGAGAAGAACTCTGT
tactaat putative branch site (score: 9)
ttactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagttgatttgaaattgtggctgttattctttgcggtttaccttccgagatgatgttactaatacttggtgggttgaaaatcaccgcatggttgcagGGTTGTACTTTTCTGTTTCACTCGATTTTGAGGATTTTGGTGGCAGTGGACAGTTGTACTTGTGGGATGTACATCAGTCGACTTTAGAGAAGAACTCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC