1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taaaattttaaaaccaatgacttagtcatgattatctgtgagagaagcgtgaggtgctaatggctgcataacgtgcacaactatgcctggcatgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAGAAGTTTGGGCTCAGCGGACGGGTTCAGAGATCGTGATGGCAGAGGGCC
species | Physcomitrella patens |
transcript | PP1S98_142V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|37826237|gb|BJ584249.1|BJ584249
genomic: TAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: TCTTGGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|208381435|gb|DC927871.1|DC927871
genomic: TCTTGGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATNTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|100406046|gb|BY991512.1|BY991512
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCGGCTGGTGAGCAGCTAEST: gi|208371713|gb|DC951775.1|DC951775
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGNTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|100362534|gb|BY947402.1|BY947402
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: NAA-GTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|37840803|gb|BJ598811.1|BJ598811
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: TGGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|208396551|gb|DC915863.1|DC915863
genomic: TGGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|67574460|gb|BJ947284.1|BJ947284
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|162166212|gb|FC342623.1|FC342623
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|37839851|gb|BJ597859.1|BJ597859
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: CGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAEST: gi|67697877|gb|BJ958110.1|BJ958110
genomic: CGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
EST: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG GTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
genomic: GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGgtgagtcttg ... catgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTA
agcgtgaggtgctaatggctgcataacgtgcacaactatgcctggcatgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAGAAGTTTGGGCTCAGCGGACGGGTTCAGAGATCGTGATGGCAGAGGGCC
atgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaattttaaaaccaatgacttagtcatgattatctgtgagagaagcgtgaggtgctaatggctgcataacgtgcacaactatgcctggcatgttaaagGTGCTCATGGCGGCAGGTGACACCTTTCGAGCTGCAGCTGGTGAGCAGCTAGAAGTTTGGGCTCAGCGGACGGGTTCAGAGATCGTGATGGCAGAGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcaca