1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCGCCCTGCAGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttgaattgattataagaagacatttgttctgctcacgtgtcacgaccagaaaatttatcatccaagttttagtcattctcaactgttgccaggcttgcgtttctctaaggtatgttcggtttgtttggacag
species | Physcomitrella patens |
transcript | PP1S98_142V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTACTCANGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATNTAAGAAAGAAGGTGTAAAGEST: gi|100406046|gb|BY991512.1|BY991512
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|208371713|gb|DC951775.1|DC951775
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGNTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|208354010|gb|DC914122.1|DC914122
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGANGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATTTAAGAEST: gi|100362534|gb|BY947402.1|BY947402
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGA
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAAC-ACCACTCTTG NAA-GTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|100436742|gb|BY979503.1|BY979503
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAEST: gi|208396551|gb|DC915863.1|DC915863
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGA
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|67574460|gb|BJ947284.1|BJ947284
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|162166212|gb|FC342623.1|FC342623
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAGEST: gi|208353643|gb|DC938752.1|DC938752
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAAGAAAGAAGGTGTAAAG
EST: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTG GAAAGTTAGCGAATANATTTAA
genomic: AGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttga ... gtttggacagGAAAGTTAGCGAATAGATTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCCCTGCAGTACTCATGATTGTCGGTGTAAATGGAGGAGGAAAAACCACCACTCTTGgtaagtttgaattgattataagaagacatttgttctgctcacgtgtcacgaccagaaaatttatcatccaagttttagtcattctcaactgttgccaggcttgcgtttctctaaggtatgttcggtttgtttggacag
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - GGAGGA