1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaagatcctggccgttttctaatgtggctagttgtcgtcggcatttaaaaaagtctcaaatattcatgtgtctctctttgtttgaatgactgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGGAAGGAATCGACGACTTGCAACCTTTTGATGCCCAATCATTTGTTGATG
species | Physcomitrella patens |
transcript | PP1S98_142V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|37833608|gb|BJ591620.1|BJ591620
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|37826237|gb|BJ584249.1|BJ584249
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGCGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGACGTTGGGEST: gi|162166211|gb|FC342622.1|FC342622
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|208381435|gb|DC927871.1|DC927871
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|208371713|gb|DC951775.1|DC951775
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|37847920|gb|BJ605928.1|BJ605928
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|37840803|gb|BJ598811.1|BJ598811
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|208396551|gb|DC915863.1|DC915863
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|162166212|gb|FC342623.1|FC342623
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTNCA-TTCCAGTGAAGTTCGTGGGCGTTGGEST: gi|37845162|gb|BJ603170.1|BJ603170
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCT-CAATTCCAGTGAAGTTCGTGGGCGTTGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|37839851|gb|BJ597859.1|BJ597859
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGEST: gi|67697877|gb|BJ958110.1|BJ958110
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
EST: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTG GTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
genomic: CTGGGTTCATCCTGACCAAGCTGGACGGCACTGCTCGAGGTGGCTGTGTGgtatgctctc ... ctgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGG
ttaaaaaagtctcaaatattcatgtgtctctctttgtttgaatgactgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGGAAGGAATCGACGACTTGCAACCTTTTGATGCCCAATCATTTGTTGATG
aaatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagatcctggccgttttctaatgtggctagttgtcgtcggcatttaaaaaagtctcaaatattcatgtgtctctctttgtttgaatgactgtgaacagGTTAGCGTTGTGGATGAGCTCTCAATTCCAGTGAAGTTCGTGGGCGTTGGGGAAGGAATCGACGACTTGCAACCTTTTGATGCCCAATCATTTGTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA