1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taatcctcatggccttaccacacgcacggaagtggctcacgaagcagtagttttatgggaaaggaaggattttaattcgctgggttgcacactggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACACCATTCGCAAGGACATCCTCGCAGGCAGGTTGAAGTCTGGACCACAGA
species | Physcomitrella patens |
transcript | PP1S98_142V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100406046|gb|BY991512.1|BY991512
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGGCTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|208354010|gb|DC914122.1|DC914122
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100362534|gb|BY947402.1|BY947402
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGGTGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100383126|gb|BY987023.1|BY987023
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100436742|gb|BY979503.1|BY979503
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100424608|gb|BY976725.1|BY976725
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|18347068|gb|BJ179114.1|BJ179114
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|18362592|gb|BJ194663.1|BJ194663
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100405617|gb|BY973767.1|BY973767
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|67574460|gb|BJ947284.1|BJ947284
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|18356665|gb|BJ188724.1|BJ188724
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGEST: gi|100391599|gb|BY989465.1|BY989465
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTG
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|100441955|gb|BY981178.1|BY981178
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|208353643|gb|DC938752.1|DC938752
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|18361896|gb|BJ193963.1|BJ193963
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACEST: gi|18363657|gb|BJ195729.1|BJ195729
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
EST: CCTACTGGAACTTGGATGAGTCTGANAGTATCCTTGACGAGCTAGAAGAG GTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
genomic: CCTACTGGAACTTGGATGAGTCTGAGAGTATCCTTGACGAGCTAGAAGAGgttcggagct ... actggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGAC
agtagttttatgggaaaggaaggattttaattcgctgggttgcacactggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACACCATTCGCAAGGACATCCTCGCAGGCAGGTTGAAGTCTGGACCACAGA
ttttaat putative branch site (score: 7)
attttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcctcatggccttaccacacgcacggaagtggctcacgaagcagtagttttatgggaaaggaaggattttaattcgctgggttgcacactggcacagGTATTGCTTGTATCCGACTTTGGGCCTAAAACGGCTCTGAAGATTGTGGACACCATTCGCAAGGACATCCTCGCAGGCAGGTTGAAGTCTGGACCACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - cacacgc