1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTTGTGGAAGCAGAGGCAGAGAAGAAGCCTGAAGTGGCTGGTGACGCCACAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttctttcagtttatcgagtaaatttgtagttgaagtgatgtgaaaatgttaattgctcattgcctgtattttgatgtggtgcag
species | Physcomitrella patens |
transcript | PP1S97_246V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAAC GAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCTEST: gi|162196137|gb|FC372971.1|FC372971
genomic: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttc ... tgtggtgcagGAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCT
EST: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAAC GAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCTEST: gi|100397162|gb|BY972361.1|BY972361
genomic: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttc ... tgtggtgcagGAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCT
EST: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAAC GAAATGACCTTGGAGEST: gi|208366445|gb|DC955558.1|DC955558
genomic: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttc ... tgtggtgcagGAAATGACCTTGGAG
EST: CAACTGGAGAGGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAAC GAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCTEST: gi|162157544|gb|FC333802.1|FC333802
genomic: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttc ... tgtggtgcagGAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCT
EST: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAAC GAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCT
genomic: CAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttc ... tgtggtgcagGAAATGACCTTGGAGGAGTATGAAAAGGTTTTGGCGGATAAGCGTAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGTGGAAGCAGAGGCAGAGAAGAAGCCTGAAGTGGCTGGTGACGCCACAACTGGAGAAGGCGCCGTTGAACCTGTGAAGGAGGAAGAGGAGGACAACgtgagttttctttcagtttatcgagtaaatttgtagttgaagtgatgtgaaaatgttaattgctcattgcctgtattttgatgtggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA