1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cccgtgactgtctacatactcgtcatgaaagttgtcttccgtttgcatatctgattgtagtgtattgcattattcgttcttcttttcttttcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATCAGGGCGCGGCGGTCGTGGTAACTTCAGTGATCGTGAGGGTGGTGCTCC
species | Physcomitrella patens |
transcript | PP1S97_246V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|67717357|gb|BJ967616.1|BJ967616
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|100397162|gb|BY972361.1|BY972361
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|67571776|gb|BJ944600.1|BJ944600
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTANAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|67508332|gb|BJ941200.1|BJ941200
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|100379406|gb|BY986621.1|BY986621
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: GCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCT-ACAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAEST: gi|67572948|gb|BJ945772.1|BJ945772
genomic: GCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGA-AGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGA
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|100429264|gb|BY978023.1|BY978023
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|208394404|gb|DC942564.1|DC942564
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATEST: gi|162157544|gb|FC333802.1|FC333802
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
EST: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTG CTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
genomic: TGCCGCTCCTGCTAAGCTCCCAACCAAGCCCGCTCCTCCCTCTGAAGCTGgtatgtgctc ... tcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGAT
catatctgattgtagtgtattgcattattcgttcttcttttcttttcttttccagCTAGAGGCGTCCAAAGAAATCAGCATGAAGGAGGTAGAGGTGGCCGGGGATCAGGGCGCGGCGGTCGTGGTAACTTCAGTGATCGTGAGGGTGGTGCTCC
atctgat putative branch site (score: 17)
tattgcattattcgtt putative PPT
ttttcttttctttt TA-rich tract