1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtagtatgggatgacaaataaagatgtattcaactgcctggtgacgttaccttaacaaatctttctgcatgtgcagttcattaaatttccttctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGAGGCAGAGAAGAAGCCTGAAGTGGCTGGTGACGCCACAACTGGAGAAGGC
species | Physcomitrella patens |
transcript | PP1S97_246V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA GGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGAEST: gi|100397162|gb|BY972361.1|BY972361
genomic: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCAgtaagtagta ... ctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGA
EST: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA GGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGAEST: gi|162157544|gb|FC333802.1|FC333802
genomic: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCAgtaagtagta ... ctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGA
EST: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA GGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGA
genomic: GGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCAgtaagtagta ... ctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGA
taccttaacaaatctttctgcatgtgcagttcattaaatttccttctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGAGGCAGAGAAGAAGCCTGAAGTGGCTGGTGACGCCACAACTGGAGAAGGC
ccttaac putative branch site (score: 15)
tttccttctctgtgc putative PPT
agttcattaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtatgggatgacaaataaagatgtattcaactgcctggtgacgttaccttaacaaatctttctgcatgtgcagttcattaaatttccttctctgtgcagGGAAACTGTAGAGCCCGCCAAAGAAGATGACAAGCCAGTTGTGGAAGCAGAGGCAGAGAAGAAGCCTGAAGTGGCTGGTGACGCCACAACTGGAGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA