1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acatgcagtggccgatttatctcaattttttttgaacgaagaaagtgtagtcggttgcgttgcgattattccgctgatgcaatgattgtgtctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA
species | Physcomitrella patens |
transcript | PP1S97_246V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGG AAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGAEST: gi|100397162|gb|BY972361.1|BY972361
genomic: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGGgtgagtacca ... tctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGA
EST: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGG AAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGAEST: gi|67508332|gb|BJ941200.1|BJ941200
genomic: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGGgtgagtacca ... tctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGA
EST: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCANAGG AAACGAGTTCGAGAAGEST: gi|162157544|gb|FC333802.1|FC333802
genomic: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGGgtgagtacca ... tctactacagAAACGAGTTCGAGAAG
EST: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGG AAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGA
genomic: GAACGTCCGCGCAGACGCGAGTTTGATCGTCACAGTGGAACAGGCAGAGGgtgagtacca ... tctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGA
tgtagtcggttgcgttgcgattattccgctgatgcaatgattgtgtctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA
cgctgat putative branch site (score: 21)
attatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgcagtggccgatttatctcaattttttttgaacgaagaaagtgtagtcggttgcgttgcgattattccgctgatgcaatgattgtgtctactacagAAACGAGTTCGAGAAGAGATCAGGTGCTGGCCGCGGCAACTGGGGAACTGAAGTAGACCCTGCTCTTATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca