1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaagaagtttctagaattattttcttggaatagtgacttcttgcaagtttcagtattatttgccgggaataagttcttatctgtatattggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACTTCTAGAAAATGTCATGCAAAACCGTATCCAGTACATTTGTCAAGAGGAA
species | Physcomitrella patens |
transcript | PP1S96_143V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTACTCAAAAGTCACTCGTTTTTTGTTTTATCTGCAATTACGTTAGTCG AATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACTEST: gi|162253752|gb|FC429866.1|FC429866
genomic: ATTACTCAAAAGTCACTCGTTTTT-GTTTTATCTGCAATTACGTTAGTCGgtgagagttc ... ggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACT
EST: AATTACTCAAAAGTCACTCGTTTTTGTTTTATCTGCAATTACGTTAGTCG AATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACTEST: gi|162253753|gb|FC429867.1|FC429867
genomic: AATTACTCAAAAGTCACTCGTTTTTGTTTTATCTGCAATTACGTTAGTCGgtgagagttc ... ggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACT
EST: AATTACTCAAAAGTCACTCGTTTTTGTTTTATCTGCAATTACGTTAGTCG AATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACT
genomic: AATTACTCAAAAGTCACTCGTTTTTGTTTTATCTGCAATTACGTTAGTCGgtgagagttc ... ggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACT
aagtttcagtattatttgccgggaataagttcttatctgtatattggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACTTCTAGAAAATGTCATGCAAAACCGTATCCAGTACATTTGTCAAGAGGAA
agtattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagaagtttctagaattattttcttggaatagtgacttcttgcaagtttcagtattatttgccgggaataagttcttatctgtatattggggttccagAATCATTGAGCCATTGGCATCACGGTGCGCTAAATTCCGTTTCAAACCACTTCTAGAAAATGTCATGCAAAACCGTATCCAGTACATTTGTCAAGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA