1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCGGCCCCGGAAGGTGAAGGATGTCGCCCATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAATgtaagtatctggaaggaattggtgaatcattttttctgtgtttcatttttattttgttgactgtattaggagaacaggttatcatggaaaagatgaatgttggttgcag
species | Physcomitrella patens |
transcript | PP1S96_143V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAAT TTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACAEST: gi|162253753|gb|FC429867.1|FC429867
genomic: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAATgtaagtatct ... ttggttgcagTTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACA
EST: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAAT TTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACAEST: gi|100424720|gb|BY976781.1|BY976781
genomic: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAATgtaagtatct ... ttggttgcagTTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACA
EST: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAAT TTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACA
genomic: ATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAATgtaagtatct ... ttggttgcagTTGCCGCACCTCCTATTTTATGGACCTCCAGGCACAGGGAAGACCACAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGCCCCGGAAGGTGAAGGATGTCGCCCATCAGGAGGAGGTCGTCCGCACTCTCACCAACACACTCGAAACGGGAAATgtaagtatctggaaggaattggtgaatcattttttctgtgtttcatttttattttgttgactgtattaggagaacaggttatcatggaaaagatgaatgttggttgcag
- - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAG