1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgacactaacaccattttgcttgtgtggtgaatatgttaatgatgaaatctgcaatataaacgcgaataaatgacacaaactggcatttttgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTCAATGACTGAAGATGCACAG
species | Physcomitrella patens |
transcript | PP1S96_143V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAG CGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTCEST: gi|162253753|gb|FC429867.1|FC429867
genomic: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAGgtattcatct ... tgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTC
EST: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAG CGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTCEST: gi|100424720|gb|BY976781.1|BY976781
genomic: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAGgtattcatct ... tgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTC
EST: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAG CGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTC
genomic: CGGACGAAGATCAAGGATTTCGCTGGTGTTGCCGTTGGTGCCGGTGTGAGgtattcatct ... tgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTC
aaatctgcaatataaacgcgaataaatgacacaaactggcatttttgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTCAATGACTGAAGATGCACAG
tttttgtttt CT-rich tract
atttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacactaacaccattttgcttgtgtggtgaatatgttaatgatgaaatctgcaatataaacgcgaataaatgacacaaactggcatttttgttttgcagCGGTTATCCGTGTCCTCCTTTCAAAGTTCTTATACTGGACGAAGCCGACTCAATGACTGAAGATGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG