1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATTCGATTTTGTTGTACAATCTCCAAATATTAGCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAGgtaatcccttgtcctcttgctcaactagtgtcaaacttcactctgttccaattttctgtattaatgttttttttttatcttctgttaaatttacgcttta...
species | Physcomitrella patens |
transcript | PP1S96_143V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAG TGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGCEST: gi|67701479|gb|BJ961712.1|BJ961712
genomic: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAGgtaatccctt ... gatatatcagTGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGC
EST: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAG TGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGCEST: gi|162253752|gb|FC429866.1|FC429866
genomic: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAGgtaatccctt ... gatatatcagTGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGC
EST: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAG TGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGC
genomic: GCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAGgtaatccctt ... gatatatcagTGTCTCATTGACGGGGCAGACGAATACCTTCAGCTAATGGATGTTGCTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTCGATTTTGTTGTACAATCTCCAAATATTAGCGACATTCAAAAAGCTAGAATCACAGAGAGGCTTGCTGAAACTGACAAGgtaatcccttgtcctcttgctcaactagtgtcaaacttcactctgttccaattttctgtattaatgttttttttttatcttctgttaaatttacgcttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG