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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattgtgtgctttgattactaggtagaaaagctttctttagtttcacattcatttgtttgtatgtttacatgtccagttcgattggcttgaaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGCCAGCTACTTTTAAACAGGCTATTATGTCCGTCAGGGATGGGGGTCGAG

Basic information

species Physcomitrella patens
transcript PP1S95_68V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186380|gb|FC362936.1|FC362936
EST:     GAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: GAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162188953|gb|FC364343.1|FC364343
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162159246|gb|FC335099.1|FC335099
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|100388844|gb|BY988720.1|BY988720
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|37827597|gb|BJ585609.1|BJ585609
EST:     AAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: AAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162269678|gb|FC444883.1|FC444883
EST:     AAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: AAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162164957|gb|FC342148.1|FC342148
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162267940|gb|FC444021.1|FC444021
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162158770|gb|FC335098.1|FC335098
EST:     TGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: TGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: gi|162186381|gb|FC362937.1|FC362937
EST:     CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG                         GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcatttgtttgtatgtttacatgtccagttcgattggcttgaaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGCCAGCTACTTTTAAACAGGCTATTATGTCCGTCAGGGATGGGGGTCGAG
                                                ctttt  CT-rich tract
                                             aaactttta  TA-rich tract