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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAAGCAGCAGTACTTTGGGAGCCTAGGAAGGCTATGACGATCGAGGAGCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAGgtattcactgctcttctattcgctagaggtaaattcttgacagaacagaagatcttctgggttagcaggttcaacgtgcgtgaaacaagaatgcattctttgatttgtactaacttacattcttgcattgtatag

Basic information

species Physcomitrella patens
transcript PP1S95_68V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269692|gb|FC444884.1|FC444884
EST:     GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAG                         CTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT
genomic: GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAGgtattcactg ... cattgtatagCTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT
EST: gi|162188954|gb|FC364344.1|FC364344
EST:     GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAG                         CTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT
genomic: GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAGgtattcactg ... cattgtatagCTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT
EST: gi|67572828|gb|BJ945652.1|BJ945652
EST:     GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAG                         CTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT
genomic: GCTCAAATTGCCTCGCCCTCAAGTTGGCGAGGTCTTGATTAGAACCAAAGgtattcactg ... cattgtatagCTTGTGGAGTCTGTCACTCAGATTTGCATGTCATGAACAATGACATTCCGT