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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcaccttttacatatttatccagctagaactactttgattgtttagagttgtatggaacacattatgcacttcgcgttcttttactcagcgaccgtgaatcattaggtgaattctgtttgctctccgagtgaagtgtcccagagacaagtgaaagtggataacagtcggtgacttttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S95_68V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269692|gb|FC444884.1|FC444884
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
EST: gi|162188954|gb|FC364344.1|FC364344
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
EST: gi|162164957|gb|FC342148.1|FC342148
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
EST: gi|162267940|gb|FC444021.1|FC444021
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
EST: gi|67572828|gb|BJ945652.1|BJ945652
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGA
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGA
EST: gi|162186381|gb|FC362937.1|FC362937
EST:     TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG                         GGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG
genomic: TTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTGgtatactcac ... ttttgtgcagGGGATCCTGTATACATGTACAGCATGGGTGGTCTGGCTGAGTACTGTGTAG