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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagttgacagacattttggatcaccaagtggattgctcttgtgttgaaaatgctctgtgcagctaataatattcattcgtgtcaaactgttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG

Basic information

species Physcomitrella patens
transcript PP1S95_68V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269692|gb|FC444884.1|FC444884
EST:     TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: gi|162188954|gb|FC364344.1|FC364344
EST:     TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: gi|162164957|gb|FC342148.1|FC342148
EST:     CTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: CTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: gi|162267940|gb|FC444021.1|FC444021
EST:     TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: gi|67572828|gb|BJ945652.1|BJ945652
EST:     TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: gi|162186381|gb|FC362937.1|FC362937
EST:     TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG                         GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaatgctctgtgcagctaataatattcattcgtgtcaaactgttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG
                agctaat  putative branch site (score: 3)
                   taataatattcatt  TA-rich tract