Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattttgtttttccaactcgaagcccggaaattttgaaaattactggccccaaatatgtttgggttatgctgctgcgacatctcgtgatttcaagttcctacctaacaagcgatgatgcttgggttccattgtgtag

Basic information

species Physcomitrella patens
transcript PP1S94_154V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338826|gb|BJ170851.1|BJ170851
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208387406|gb|DC949191.1|DC949191
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208374909|gb|DC956182.1|DC956182
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208365450|gb|DC950917.1|DC950917
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208354165|gb|DC957399.1|DC957399
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208353406|gb|DC946312.1|DC946312
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGGCCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208369206|gb|DC955835.1|DC955835
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|67724374|gb|BJ974633.1|BJ974633
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208354175|gb|DC957409.1|DC957409
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208365296|gb|DC950767.1|DC950767
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
EST: gi|208354338|gb|DC953786.1|DC953786
EST:     AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG                         CGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG
genomic: AACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACGgtgagaattt ... cattgtgtagCGCTGCATCAAGCGGGAGCATACAAGCACCTATTGAGTGAGACCGACCACG