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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAATCCCCAATTTTCTACCAAGTTGGGAATTTACCAAGAAAAGTGCGGGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttcgaggtccccaacaccaccacgttctgtcttcttgtgtttgctcgcgacattactaattttcatgtccaaccggtctattttattctatttttcactttcttttctacaaacctgatgatacag

Basic information

species Physcomitrella patens
transcript PP1S94_154V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S94_154V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 7
GCATAATCCCCAATTTTCTACCAAGTTGGGAATTTACCAAGAAAAGTGCGGGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttcgaggtccccaacaccaccacgtt-ctgtcttcttgtgtttgctc-gcgacattactaattttcatgtccaaccggtctattttattctatttttcactttcttttctacaaacctgatgata-cag
 |  || ||  |  |    |||||||| ||    |||   ||    || || |||||||| ||  |||||||||||||||| ||||| |||||||||| ||||  ||  |  ||| |       |    | |  |    | | |    | |  | | || ||    | || |  |    |    ||   |||| |   |  | |   | | |||  |     | || | ||  |||
CCTGAACCCAAAGCTCAACACCAAGTTTGGGGCCTACTCCGAGGGCTGTGGCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGgtaaaaca-cacggttcatcgtgtcgattcatcaccaattgcataccatggagcagagaaatcttcagttctagtactgaggttgta-gttttctctgaaatgttgatgtgtttcttgtt--cttgttcatctcag

upper sequence: PP1S94_154V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GRMZM2G126900_T02 (Zea mays), 5'ss of exon 6
GCATAATCCCCAATTTTCTACCAAGTTGGGAATTTACCAAGAAAAGTGCGGGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttcgaggtccccaacac-caccacgttctgtcttcttgtgtt---tgctcgcgacattactaattttcatgtccaaccggtctattttattctatttttcactttcttttctacaaacctgatgatacag
 || || ||  |  |    |||||||||||  | |||   ||    ||||| ||  |||| ||| ||||||| |||||||||||||| |||||||||| |||     | |    | |  |       || |||   |                |      | |   ||   |  |||| |   |  |  | |     |     | ||| | || | ||  ||               
CCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatccacattgcgtagtgtgtgccgcgtgaagggagaagaaaagaaaagaaaagaaaaacgctgcctggcatggcatgcatgcatgtgcgtgtgctcatctca-tctcatctcgtcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338826|gb|BJ170851.1|BJ170851
EST:     GGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208387406|gb|DC949191.1|DC949191
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208374909|gb|DC956182.1|DC956182
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208365450|gb|DC950917.1|DC950917
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354165|gb|DC957399.1|DC957399
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208353406|gb|DC946312.1|DC946312
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208369206|gb|DC955835.1|DC955835
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|67724374|gb|BJ974633.1|BJ974633
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAGCAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354175|gb|DC957409.1|DC957409
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208365296|gb|DC950767.1|DC950767
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354338|gb|DC953786.1|DC953786
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC