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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttcgaggtccccaacaccaccacgttctgtcttcttgtgtttgctcgcgacattactaattttcatgtccaaccggtctattttattctatttttcactttcttttctacaaacctgatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG

Basic information

species Physcomitrella patens
transcript PP1S94_154V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338826|gb|BJ170851.1|BJ170851
EST:     GGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208387406|gb|DC949191.1|DC949191
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208374909|gb|DC956182.1|DC956182
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208365450|gb|DC950917.1|DC950917
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354165|gb|DC957399.1|DC957399
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208353406|gb|DC946312.1|DC946312
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208369206|gb|DC955835.1|DC955835
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|67724374|gb|BJ974633.1|BJ974633
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAGCAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354175|gb|DC957409.1|DC957409
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208365296|gb|DC950767.1|DC950767
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
EST: gi|208354338|gb|DC953786.1|DC953786
EST:     GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAG                         GTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC
genomic: GGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttc ... gatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accggtctattttattctatttttcactttcttttctacaaacctgatgatacagGTCATGAAGCACAACAATACAACACTTCCACCGCAAGCGTTGTTTGTTATCCGCTACCACTCCTTTTACG
                                         acctgat  putative branch site (score: 4)
       tattttattctatttt  TA-rich tract