1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atggagctggtgtaaataaatgggtctcaattgatcagtaacgttatattcaatgaactctctactctcgtaactggcacaaattgcattttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTACAAAAGGTGACGGTGCATCAGTGAACAGTTCGAAAGTAGATTCTGTCG
species | Physcomitrella patens |
transcript | PP1S94_133V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|67724422|gb|BJ974681.1|BJ974681
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTEST: gi|162208279|gb|FC384383.1|FC384383
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
EST: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAG GAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
genomic: CTTTCCTAGACACCAAGATTGCTCCAAAGGAGTTTGTTGACGAGATCAAGgtactcaatc ... ttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTT
atattcaatgaactctctactctcgtaactggcacaaattgcattttgtttgcagGAGGTCGGCAGAGTGCTGCTACCAAAGGATGGTGAGTCCAGCTCTGCAGTTACAAAAGGTGACGGTGCATCAGTGAACAGTTCGAAAGTAGATTCTGTCG
tcgtaac putative branch site (score: 11)
ttttgttt putative PPT
attttgttt TA-rich tract