1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAGgtgagttgtaagcttcaacttctgggagagtttgctatgctcattagccaggtgacgatcaaaattaactgtggcacacattaattcgagcagttgaattttttctctcttatatactgaatgtgggatgcggtatggcttgcag
species | Physcomitrella patens |
transcript | PP1S94_133V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAG GATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATTEST: gi|67724422|gb|BJ974681.1|BJ974681
genomic: GGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAGgtgagttgta ... tggcttgcagGATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATT
EST: GGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAG GATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATTEST: gi|162208279|gb|FC384383.1|FC384383
genomic: GGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAGgtgagttgta ... tggcttgcagGATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATT
EST: GGTCACCCGCATTTGTGCAGATATTCTTAAAAAAGTTCATGTTTGCGGAG GATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATT
genomic: GGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAGgtgagttgta ... tggcttgcagGATAGAGAAAAGACCGTCAAAGAGATTCAAACTTTCCTAGACACCAAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAGgtgagttgtaagcttcaacttctgggagagtttgctatgctcattagccaggtgacgatcaaaattaactgtggcacacattaattcgagcagttgaattttttctctcttatatactgaatgtgggatgcggtatggcttgcag
- - - - - - - - - - - - - - - - - - - - GCAGAT