1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaaagattctaaccaatctcagtttcgaagtaattgaatctattatcgtcacaagtcttaaaacactttggcaatattcttacttacaagtgatatgtgggcttatttgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAG
species | Physcomitrella patens |
transcript | PP1S94_133V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCEST: gi|67724422|gb|BJ974681.1|BJ974681
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG GCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCEST: gi|162208279|gb|FC384383.1|FC384383
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
EST: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCAGTGAG GCAGAGACTGTTCTGCAGTTGTTAGGGTCACCCGCATTTGTGCAGATATTC
genomic: CTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAGgtaaaaagat ... tgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTC
acactttggcaatattcttacttacaagtgatatgtgggcttatttgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAG
tacttac putative branch site (score: 25)
cttattt putative PPT
aatattcttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagattctaaccaatctcagtttcgaagtaattgaatctattatcgtcacaagtcttaaaacactttggcaatattcttacttacaagtgatatgtgggcttatttgtgatacagGCAGAGACTGTTCTGCAGTTGTTAGGGTCAGCCGCATTTGTGCAGATATTCTTTAAAAAGTTCATGTTTGCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT