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...ctatcatgtggtttcagtttagagtaacttcaactcatcatcttattgatgtgaacgctgcatcgtgcttatgtactctctggattttccatgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTTCGAGAAGGCGTACTCCATCAAAGGAGGCGTAGAAGGCCCCAAAGGATGG
species | Physcomitrella patens |
transcript | PP1S94_133V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA ATTGGACGAAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTEST: gi|67724422|gb|BJ974681.1|BJ974681
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCT
EST: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA ATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTTEST: gi|208361962|gb|DC943445.1|DC943445
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTT
EST: TTTGCCAAATACCGCGACGCCNAGAATACCACTGTCTACATTTTGGACCA ATTGGACGGAAATTCTCTTGCAGTTGCAAAEST: gi|100378304|gb|BY949784.1|BY949784
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAA
EST: TTTGCCNAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCA -TTGNACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCNTAACA-TGGCT
genomic: TTTGCCAAATACCGCGACGCCGAGAATACCACTGTCTACATTTTGGACCAgtaagtgctt ... atgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGC-TAACAATGGCT
ttgatgtgaacgctgcatcgtgcttatgtactctctggattttccatgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTTCGAGAAGGCGTACTCCATCAAAGGAGGCGTAGAAGGCCCCAAAGGATGG
tattgat putative branch site (score: 13)
ttttccat putative PPT
ttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcatgtggtttcagtttagagtaacttcaactcatcatcttattgatgtgaacgctgcatcgtgcttatgtactctctggattttccatgggcatagATTGGACGGAAATTCTCTTGCAGTTGCAAAGATTCTCGCTAACAATGGCTTCGAGAAGGCGTACTCCATCAAAGGAGGCGTAGAAGGCCCCAAAGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG