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...atagcacatcgggtaatttgagaactatatggtgctcttttgctgcatgataagctgttacttggtcaacattttaacctcatactgtgttgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCATATGTCAACACGTCTTGG
species | Physcomitrella patens |
transcript | PP1S92_53V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCAEST: gi|162257238|gb|FC433114.1|FC433114
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: TCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCAEST: gi|37829259|gb|BJ587271.1|BJ587271
genomic: TCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCAEST: gi|19784441|gb|BQ040174.1|BQ040174
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCAEST: gi|162157909|gb|FC334895.1|FC334895
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCAEST: gi|162196285|gb|FC375394.1|FC375394
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
EST: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAA ATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
genomic: GCAGTATTCTATTCCTTCCACGACAAATGTTTCGAGTTGAAAGTACAAAAgtatgtcacg ... tgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCA
catgataagctgttacttggtcaacattttaacctcatactgtgttgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCATATGTCAACACGTCTTGG
ttttaac putative branch site (score: 10)
aacattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagcacatcgggtaatttgagaactatatggtgctcttttgctgcatgataagctgttacttggtcaacattttaacctcatactgtgttgaacttcagATACAACTACAAGGTTTGCCCCTTCAAGCAAGCCATCCAGCAGGAGGGCCATATGTCAACACGTCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - tgctgca