1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacaatttttgtaatcaacattctccttgatcgtgtgtctagtagggatatgagtatcgaggctgcttattctttcaaaaaacgcaataactgtaaggtttattttaggttatctttgggcgttgcgaccttcggttctatgagaagctcgttctgatcagagagcatacctgtgctgattttatctcgcagGTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACCAAAGCAGAATGCGCTCCAACTCTGGAAGAAACCAATGAGGATGCGCCTG
species | Physcomitrella patens |
transcript | PP1S92_53V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGTGAAATCCGCTGACCAGCAATCGAATACCGAGTCAGGAGTG GTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACCEST: gi|162160590|gb|FC336359.1|FC336359
genomic: GAAGAAGTGAAATCCGCTGACCAGCAATCGAATACCGAGTCAGGAGTGgtacaatttt ... tatctcgcagGTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACC
EST: GTGAAGAAGTGAAATCCGCTGACCAGCAATCGAATACCGAGTCAGGAGTG GTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGANACC
genomic: GTGAAGAAGTGAAATCCGCTGACCAGCAATCGAATACCGAGTCAGGAGTGgtacaatttt ... tatctcgcagGTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACC
ctatgagaagctcgttctgatcagagagcatacctgtgctgattttatctcgcagGTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACCAAAGCAGAATGCGCTCCAACTCTGGAAGAAACCAATGAGGATGCGCCTG
tgctgat putative branch site (score: 8)
ttttatctc CT-rich tract
tgattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatttttgtaatcaacattctccttgatcgtgtgtctagtagggatatgagtatcgaggctgcttattctttcaaaaaacgcaataactgtaaggtttattttaggttatctttgggcgttgcgaccttcggttctatgagaagctcgttctgatcagagagcatacctgtgctgattttatctcgcagGTTGAATCCGACAGTAAAGCTCAGAAAGCAGATGGTGCTAGTCATGAAACCAAAGCAGAATGCGCTCCAACTCTGGAAGAAACCAATGAGGATGCGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG