1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagttggttttagtgatgtgctgactgtttcatattcattttctgtgtctgtgttgagattttttgtgtattacgtgcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCACTGTTCAACATCAAATTTCAGAGTTGGAGTCTAAACTGAAAGAAGACTT
species | Physcomitrella patens |
transcript | PP1S92_53V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAG AAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCAEST: gi|37829259|gb|BJ587271.1|BJ587271
genomic: TATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAGgtgagttggt ... gcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCA
EST: TATTCCAGGGATGATGAAACGTTTNTACAGGAAGCCTGTGGATAAATCAG AAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCAEST: gi|162157909|gb|FC334895.1|FC334895
genomic: TATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAGgtgagttggt ... gcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCA
EST: ACAGGAAGCCTGTGGATAAATCAG AAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCAEST: gi|162196285|gb|FC375394.1|FC375394
genomic: ACAGGAAGCCTGTGGATAAATCAGgtgagttggt ... gcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCA
EST: TATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAG AAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCA
genomic: TATTCCAGGGATGATGAAACGTTTCTACAGGAAGCCTGTGGATAAATCAGgtgagttggt ... gcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCA
atattcattttctgtgtctgtgttgagattttttgtgtattacgtgcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCACTGTTCAACATCAAATTTCAGAGTTGGAGTCTAAACTGAAAGAAGACTT
attttttgtgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggttttagtgatgtgctgactgtttcatattcattttctgtgtctgtgttgagattttttgtgtattacgtgcatctgcagAAGCAGAGCGGATTAGGAACCAGTACTCTGAAGCAACAACTCAATTGGCCACTGTTCAACATCAAATTTCAGAGTTGGAGTCTAAACTGAAAGAAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG