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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGCAAAAAGTGTTTTTAAACCTTGGGAGCAGCGTTCAGATTTATCAACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagcatttttatttaatgtgatgcaaaaatttggattgtatcggcgtgttgtgtacccctaactccacttttctaattctgtgtaggttgcccctgtcag

Basic information

species Physcomitrella patens
transcript PP1S92_44V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268964|gb|FC445456.1|FC445456
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162271606|gb|FC447491.1|FC447491
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTNGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162271607|gb|FC447492.1|FC447492
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162269990|gb|FC445455.1|FC445455
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162201174|gb|FC377681.1|FC377681
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|67578191|gb|BJ950358.1|BJ950358
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|67701058|gb|BJ961291.1|BJ961291
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GNTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTG
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagG-TTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTG
EST: gi|162261908|gb|FC437312.1|FC437312
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162264663|gb|FC441661.1|FC441661
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCGTTGCCCCTGTC              
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATA---------C---Cgtaagatagc ...
EST: gi|162264663|gb|FC441661.1|FC441661
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCGTTGCCCCTGTC              
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATA---------C---Cgtaagatagc ...
EST: gi|162264663|gb|FC441661.1|FC441661
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCGTTGCCCCTGTC              
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATA---------C---Cgtaagatagc ...
EST: gi|15728658|gb|BI740903.1|BI740903
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
EST: gi|162267210|gb|FC442622.1|FC442622
EST:     ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACC                         GTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA
genomic: ACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagc ... cccctgtcagGTTTACCACGGATGTGAAAATCAAGAGCATATGTGTCGTTGGCGGTGTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTGCAAAAAGTGTTTTTAAACCTTGGGAGCAGCGTTCAGATTTATCAACCGTATTGGCTAGCAATGACGATGATGCTGAGCTTATTGTTTTTATACCgtaagatagcatttttatttaatgtgatgcaaaaatttggattgtatcggcgtgttgtgtacccctaactccacttttctaattctgtgtaggttgcccctgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT