1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCTTTTCGAATCATGGGATCCTGCCTTCATCAGCACGATTGCGAGGAATATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgctgtttccaccactagttggatgtggcatgttttgcgtcgttgcccattgcaagaggagattcaaatatatcaatcattgtgccaagagtg...
species | Physcomitrella patens |
transcript | PP1S92_44V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|162271607|gb|FC447492.1|FC447492
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|162201174|gb|FC377681.1|FC377681
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|67578191|gb|BJ950358.1|BJ950358
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|162261908|gb|FC437312.1|FC437312
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|15728658|gb|BI740903.1|BI740903
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAAEST: gi|162267210|gb|FC442622.1|FC442622
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
EST: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGG GTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
genomic: ATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgc ... gtaaccacagGTTACAGCTTTGAACGAAACAGTGGAAGGAAGTGCAAAAAGTGTTTTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTTCGAATCATGGGATCCTGCCTTCATCAGCACGATTGCGAGGAATATGAGTGTGCCGGCGATTGGTCTCTGTACAAGAACATTGACATTACTGGGgtaatctcgctgtttccaccactagttggatgtggcatgttttgcgtcgttgcccattgcaagaggagattcaaatatatcaatcattgtgccaagagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC