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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGAGGAATTTTCTTCTGAGTAATCGATATCATTTCAGTACATTGAAGACGTCAAGGCAGGCCGAATCAGACATCACCATGGGGTTATTGTTAAAAGgtcagtgtgttaatgagatcctccttttgtttatagcagcatgattcaatattgctaatactatcttagttctttcacttgggtttgtttgttatcctat...

Basic information

species Physcomitrella patens
transcript PP1S91_57V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15728970|gb|BI741070.1|BI741070
EST:     AGACATCACCATGGGGTTATTGTTAAAAG                         GCCTGGTGCCAGCCCGTCAGATCCACTTGGTTATGTTGTTCGGGATCACCT
genomic: AGACATCACCATGGGGTTATTGTTAAAAGgtcagtgtgt ... ttaactgcagGCCTGGTGCCAGCCCGTCAGATCCACTTGGTTATGTTGTTCGGGATCACCT
EST: gi|162163277|gb|FC339395.1|FC339395
EST:     TGGGGTGTATTGTTAAAAG                         CCCTGGTGCCAGCCCGTCAGATCCACGTGGGTATGTTGTTCGGGATCACCT
genomic: TGGGGT-TATTGTTAAAAGgtcagtgtgt ... ttaactgcagGCCTGGTGCCAGCCCGTCAGATCCACTTGGTTATGTTGTTCGGGATCACCT
EST: gi|15729355|gb|BI741274.1|BI741274
EST:     AGACATCACCATGGGGTTATTGTTAAAAG                         GCCTGGTGCCAGCCCGTCAGATCCACTTGGTTATGTTGTTCGGGATCACCT
genomic: AGACATCACCATGGGGTTATTGTTAAAAGgtcagtgtgt ... ttaactgcagGCCTGGTGCCAGCCCGTCAGATCCACTTGGTTATGTTGTTCGGGATCACCT