Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGGGCTGTCGAAGGCGAGGCAGGGTTCTGTGATGTATTGTGACAGCTCGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaagtgatattctcgattgcaatatatctgcgagagtgggctggatgcagaattcttagtggaggtctgaatggattatggttatttatttat...

Basic information

species Physcomitrella patens
transcript PP1S91_57V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163278|gb|FC339396.1|FC339396
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|162184265|gb|FC359687.1|FC359687
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|162206600|gb|FC382358.1|FC382358
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|100422401|gb|BY976356.1|BY976356
EST:     CGAGTGCGGCGGTGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|208350890|gb|DC909937.1|DC909937
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|208400745|gb|DC904923.1|DC904923
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|208354807|gb|DC934215.1|DC934215
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|18373068|gb|BJ204670.1|BJ204670
EST:     GAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCG
genomic: GAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCT-AAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCG
EST: gi|100390576|gb|BY971331.1|BY971331
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|100439996|gb|BY980343.1|BY980343
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|100447739|gb|CJ972038.1|CJ972038
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: gi|100432011|gb|BY978620.1|BY978620
EST:     CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG                         GTGTTCAGACCAGTTGTGAGCTTCTGTTCA-TCATGCGGAGGAGCTATGCA
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGT-CAATCATGCGGAGGAGCTATGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAGGGCTGTCGAAGGCGAGGCAGGGTTCTGTGATGTATTGTGACAGCTCGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaagtgatattctcgattgcaatatatctgcgagagtgggctggatgcagaattcttagtggaggtctgaatggattatggttatttatttat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA